00:07:50.420they often think only about the part of DNA that codes directly for proteins.
00:07:56.160But those protein-coding regions of DNA make up only 1.5% of the genome.
00:08:03.920The vast majority is non-coding, what used to be dismissed as so-called junk DNA.
00:08:10.940We now know that much of it plays a critical regulatory role,
00:08:14.860controlling when genes are turned on or off, where, and how strongly proteins are expressed.
00:08:22.340So the challenge isn't just identifying variations in the coding regions. Variation in the non-coding
00:08:29.780genome may matter enormously, even when we don't yet fully understand what it means.
00:08:35.960In hindsight, the $2.7 billion task of sequencing the genome may have actually been the easier part.
00:08:44.860Accurately interpreting that sequence and what we should do with it is the far bigger challenge.
00:08:50.980To understand why, it helps to have a working mental model of how genetic variants actually
00:08:56.520produce disease. DNA is essentially a set of instructions. Those instructions get transcribed
00:09:02.680into RNA, which is then translated into proteins, the molecular machines that carry out virtually
00:09:09.520every biological function in the body. A change in those instructions is called a gene variant,
00:09:16.160or more colloquially, a mutation, though these things mean the same thing.
00:09:20.960Often the change is inconsequential, but sometimes it results in a protein that doesn't fold
00:09:26.020correctly, doesn't function as intended, or isn't produced at all. And it is that dysfunctional
00:09:32.860protein that ultimately shapes the phenotype, the observable, measurable output of the body,
00:09:38.640from a lab value to a symptom to a disease. This is the central dogma of molecular biology,
00:09:46.180meaning information flows in one direction, from DNA to RNA, RNA to protein, and protein
00:09:53.840to phenotype. For a small number of diseases, there is a relatively direct line from gene
00:10:00.900to dysfunctional protein to disease. But for the conditions that matter most, the story is much
00:10:07.520more complex. Even diseases where genetics matter a great deal tend to arise from countless
00:10:13.960interactions among many genes and environmental triggers. Before we dig into specific diseases
00:10:21.080or tests, it's important that we calibrate our expectations. Genetic testing can be useful,
00:10:27.220sometimes very useful, but it is not a perfect blueprint for health and it does not replace
00:10:32.760phenotypic data. Put another way, for genetic testing to be useful, we need to have some
00:10:39.000confidence that learning the genetic variant will actually inform something clinically.
00:10:44.500So with this in mind, let's discuss the major limitations we need to consider.
00:10:49.820The first limitation, and really the most important one, is that most things we talk
00:10:55.080about in genetics are probabilities, not guarantees. Part of the problem is that most
00:11:00.560of us were introduced to genetics through a very simplified model in high school biology class
00:11:07.440genetics is taught through mendelian inheritance we learned about dominant traits recessive traits
00:11:13.760sometimes called semi-dominant traits we drew punnett squares we crossed a white flower with
00:11:19.680a red flower and got a white red or pink flower the logic is clean the outcomes are discrete and
00:11:25.920and the relationship between genotype and phenotype appears relatively straightforward.
00:11:30.720And for a small number of traits and diseases, that framework is actually useful.
00:11:34.520There are cases where a single mutation has a large and fairly predictable effect,
00:11:39.780what we call high-penetrance mutations.
00:11:41.700And those cases are part of what makes genetics seem so promising in the first place.
00:11:48.340Huntington's disease is probably the most extreme example.
00:11:51.480The HTT gene normally contains a stretch of repeated CAG sequences.
00:11:58.820Those are just the base pairs and shorthand.
00:12:02.220In Huntington's disease, this CAG repeat is abnormally expanded.
00:12:08.520When the expanded gene is translated into protein, it produces a mutant Huntington protein that is toxic to neurons, particularly in the striatum and the cortex.
00:12:19.620If you carry this expansion above the pathologic threshold, you will develop Huntington's
00:46:15.680If your mother carries a known BRCA1 mutation and you want to know whether you inherited
00:46:21.000it, that is a very specific question, and a targeted test is the right choice. It's precise,
00:46:27.340relatively inexpensive, and gives you a clean answer. This is genetics at its best. Narrow
00:46:32.580question, specific test, interpretable result. The limitation, of course, is that it only answers
00:46:38.300the question you asked. If the question is too narrow, you may miss something important that
00:46:42.880lies just outside of the test's scope. Genotyping arrays are the technology underlying most
00:46:50.500direct-to-consumer products. They scan for hundreds of thousands of common single nucleotide
00:46:58.020polymorphisms, or SNPs, known positions in the genome where people commonly differ from one
00:47:05.520another. These tests can be useful for ancestry and physical traits, but because they only look
00:47:11.860at common variants, they will miss rarer but far more clinically significant mutations.
00:47:18.060A negative result on a consumer SNP test can create false reassurances because these tests
00:47:24.520capture only a narrow slice of the variants that may matter clinically.
00:47:29.420A related but distinct concept worth addressing here are polygenic risk scores.
00:47:35.700Rather than reporting individual SNPs, a polygenic risk score aggregates the effects of thousands
00:47:42.600of common variants across the genome into a single composite score meant to reflect overall
00:47:49.020genetic predisposition to a given disease relative to the population. The appeal here is obvious. It
00:47:55.540sounds like it should be more information than any single variant, and at the population level,
00:48:00.580these scores can capture real signal. But at the individual level, the evidence is quite
00:48:06.100underwhelming. This is an active and genuinely interesting area, but it is still very early
00:48:12.400stage. When paired with other tests or analyses, such as in the myriad MyRisk test, they may help
00:48:19.740to further stratify risk, but for now, I don't find these tests particularly useful on their own.
00:48:26.320Gene panels are up next. Rather than scanning the whole genome for common variants,
00:48:31.420A panel sequence is a defined set of genes known to be relevant to a specific condition or disease category.
00:48:40.180A hereditary cancer panel, for example, might include BRCA1, BRCA2, PALB2, CHECK2, Lynch syndrome genes, and dozens of others,
00:48:49.980all sequenced with enough depth to detect rare high-impact variants, not just the common ones.
00:48:56.160Pharmacogenetic panels work similarly, covering the key metabolic genes relevant to drug response.
00:49:03.080Panels tend to be the right tool when you have a specific clinical question and a defined set of
00:49:08.840genes that are well-established as relevant to that question. They are more expensive than SNP
00:49:15.060tests, but often covered by insurance when there is a clinical indication and the results are far
00:49:20.700more meaningful for health decisions. Whole exome sequencing and whole genome sequencing
00:49:26.240sit at the broadest end of the spectrum. Whole exome sequencing covers all protein coding regions
00:49:33.000of the genome, roughly 1.5% of total DNA, but the region where the majority of known disease-causing
00:49:39.460mutations occur. Whole genome sequencing covers everything, including the non-coding regions,
00:49:46.360though our ability to interpret variants in those regions remains quite limited.
00:49:52.280Both generate enormous amounts of data, and interpretation is highly dependent on the
00:49:57.820quality of the sequencing analysis. These tests are most appropriate for unexplained or complex
00:50:03.580presentations, a patient with a rare disease that hasn't been characterized, or a situation
00:50:08.420where a panel has come back negative, but clinical suspicion remains high.
00:50:13.300For most routine health questions, sequencing can likely answer the question, but it may provide more information than is needed.
00:50:21.940It can generate incidental findings and create more questions than answers.
00:50:26.400We've also put a comparison table in the show notes that lays out each of these test types, what they measure, and where they're most appropriate.
00:50:35.800Let me highlight where I think the most important distinctions lie.
00:50:39.420The biggest mistake I see people making is treating a consumer SNP test as though it were a clinical-grade gene panel.
00:50:48.240These are fundamentally different tools.
00:50:51.200A SNP test is scanning for common variants.
00:50:54.240It's good for ancestry, it's fun, but it's not designed to answer clinical questions about disease risk.
00:51:00.300A gene panel, by contrast, is sequencing specific genes in depth looking for rare high-impact
00:51:07.380mutations that the SNP test will miss entirely.
00:51:10.660That's why a negative BRCA result on a consumer test is not the same as a negative result
00:54:23.820One thing worth noting up front, a negative result is not always a clean bill of health.
00:54:28.500It means no pathologic variant was found on the specific test ordered, which is useful
00:54:33.740and sometimes very useful, but it does not override a strong phenotype or family history.
00:54:39.000and it does not mean something wasn't missed simply because it wasn't tested for. A negative
00:54:44.140result deserves the same careful interpretation as a positive one. With that in mind, I find it
00:54:49.300useful to sort genetic findings into a few broad categories. The first is a result that confirms
00:54:54.860something already suspected. If a lab test or family history suggests genetic condition,
00:55:01.300such as familial hypercholesterolemia, genetic testing can confirm its presence or absence.
00:55:06.640This may not change clinical management, but it can increase confidence in the diagnosis, solidify the plan, and inform testing for other family members in addition to provide coverage for medication.
00:55:18.240The second and most valuable is a result that identifies a novel but actionable risk, something that wasn't necessarily on the radar before the test, but that points to a clear next step that may not have otherwise been considered.
00:55:30.580These can be from a test that was performed specifically to answer this question, such as someone who doesn't have a strong family history of cancer, but opts to complete a hereditary cancer panel or an incidental finding from a broader test.
00:55:44.980For these results, knowledge of risk can inform more advanced cancer screening, and a clear action plan can be made.
00:55:51.620The third category is a result that adds context but not necessarily new action, a variant associated with a structural cardiac condition in a patient who already had a normal echocardiogram, for example, or a metabolic risk factor that is already being tracked through phenotype.
00:56:12.180Not every finding demands a new intervention.
00:56:15.780The fourth and most difficult is a result that points to a risk with no RCT-level action plan
00:56:23.280available. I think dementia risk in patients is probably one of the most common examples we see
00:56:29.820here. We don't really have validated screening tests or even well-established preventive
00:56:36.040strategies. Of course, there are many things that we think there are compelling and suggestive data
00:56:42.580for, but it's not quite at the same level of cancer screening for a woman with a BRCA mutation.
00:56:49.020The value here is less about established medical action and potentially more about being on the
00:56:56.280front edge of what prevention looks like and considering more planning or even perspective.
00:57:01.680That does not make the result less helpful, but it does shift what useful might look like.
00:57:07.300Every result in any of these categories should ultimately come back to a question.
00:57:11.460What now? Do we confirm a diagnosis? Do we increase our screening? Do we change treatments? Do we inform family members? Or do we simply document the finding without changing the management? If it's the last of these, I would call into question the purpose altogether. The test is just the information-gathering step. The clinical value comes entirely from what happens next.
00:57:34.600So, if I had to compress all of this into a single answer to the question, should I be doing
00:57:41.020genetic testing, my obvious response now would be, it depends. Some patients want all available
00:57:47.940information about their health, full stop, and for them, comprehensive testing may be worth it,
00:57:54.220even knowing its limitations. Others have a specific clinical question where more
00:57:59.640constraint testing is the right tool, and some are perfectly content to leave it alone. All of those
00:58:06.100positions are reasonable. But regardless of where you land, the framework is still the same. Start
00:58:11.880with the question, determine whether genetics is the right tool to answer it, choose the test that
00:58:16.840matches the question, and think through what you'll do with the results before they arrive.
00:58:21.900To make this more concrete, I think there are a few buckets we can use to think through genetics.
00:58:28.660The best use case, by far, is for something like BRCA.
00:58:33.540These mutations are highly penetrant with clear actionability.
00:58:37.320Most people do not have these mutations, but for those who do, learning about them can be life-saving.
00:58:44.220Genetics, at its worst, are the direct-to-consumer-style tests that are marketed for health purposes,
00:58:49.260the tests that look at common, low-effect variants like COMT and MTHFR
00:58:54.960and treat them as gospel for justifying supplement protocols that evidence simply doesn't support.
00:59:01.860Most aspects of health are going to sit somewhere in the middle, where genetic testing can be
00:59:06.200informative but may not be quite as clearly actionable or with as much supporting evidence.
00:59:11.620For patients with questions about risk that can't be answered with lab testing,
00:59:16.740such as predicted medication response, genetic testing can sometimes offer insight.
00:59:21.640I think ApoE deserves its own place within this category. It isn't highly actionable in the
00:59:28.980traditional sense, but that certainly doesn't make it useless. For patients with ApoE4,
00:59:33.860we may be more aggressive in reducing other risk factors for Alzheimer's disease,
00:59:38.300such as aggressive managing of lipids, promoting greater insulin sensitivity,
00:59:42.880and early adoption of treatments like GLP-1 agonists. Or it may serve as the behavioral
00:59:48.380lever to help keep a person motivated and stick with a lifestyle intervention. We may not use
00:59:54.600this information the same way we would use pharmacogenetics, but it can matter for stratifying
00:59:59.780risk and long-term planning. Beyond these categories, the clinical utility for genetics
01:00:04.740is less clear. Seeking out genetic information purely out of curiosity is not an illegitimate
01:00:11.260reason to test, provided you recognize that you may not get more clarity from the tests.
01:00:17.440Genetic testing is a tool, and like every tool we have in medicine, it has real strengths and
01:00:22.920real limitations. And its value depends almost entirely on how thoughtfully it is used. It is
01:00:29.700not a blueprint. It does not tell you everything. And it will sometimes raise more questions than
01:00:36.040it answers. But when the question is clear, the test matches the question, and the answer changes
01:00:42.400something meaningful, that is when genetic testing earns its place. That is when it stops being just
01:00:49.440an interesting data point and starts being genuinely useful. The principle I'd leave you
01:00:55.180with is simple. Test with intention. Know what you're looking for, know what you'll do when you
01:01:01.360find it out, and know what you will do if you don't. Everything else follows from that.
01:01:06.800Thank you for listening to this week's episode of The Drive. Head over to peteratiamd.com
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